Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0534
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   1.5  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.5  

>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
          3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 89 VKYIAANVFMSIVKYSKVPA 30
          +K+I ANV ++ V+Y+K+P+
Sbjct: 12 LKFILANVDLTFVEYAKLPS 31


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 DKNNLGKVALPSFTDSKTSCE 247
           D NN+ K  +PS+ D+K   E
Sbjct: 221 DDNNVSKFLIPSYNDAKELSE 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,087,855
Number of Sequences: 5004
Number of extensions: 16473
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)