Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0534
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    26   3.7  
12_01_0782 + 7163238-7163305,7164178-7164262                           25   6.5  
03_01_0259 - 1996427-1998772                                           25   6.5  

>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 71  WLLCTSPVTPHM*GPYVQAGYXXXXXXXXXXSRTPLGY 184
           WLL T  V  H   P+ + GY          +RT + Y
Sbjct: 764 WLLATEEVVDHAGEPHTEEGYEAYLRWYQPRTRTRVTY 801


>12_01_0782 + 7163238-7163305,7164178-7164262
          Length = 50

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 276 RRGGGTYRAYSQDVL 232
           RRGGG Y +Y +D+L
Sbjct: 8   RRGGGDYDSYHRDIL 22


>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 45  IFNNAHENVGCYVLHQSHLTCEGR 116
           IF   H+N GCY++  S     GR
Sbjct: 606 IFQLEHDNTGCYIVLSSMYADAGR 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,435,130
Number of Sequences: 37544
Number of extensions: 112761
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)