Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0534
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    26   3.5  

>Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical
           protein F58E10.1b protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 YDKNNLGKVALPSFTDSKTSC 244
           Y K  L +VA+PS T+S  SC
Sbjct: 503 YHKRRLKRVAVPSVTESNESC 523


>Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical
           protein F58E10.1a protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 YDKNNLGKVALPSFTDSKTSC 244
           Y K  L +VA+PS T+S  SC
Sbjct: 488 YHKRRLKRVAVPSVTESNESC 508


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  TFEYLTMLMKTLAAMYFTSHTSHVRAVCT 123
           TFE+   L+   +A Y++ H S++ +V T
Sbjct: 271 TFEFDNRLLTVFSAPYYSGHNSNLGSVAT 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,091,244
Number of Sequences: 27780
Number of extensions: 93861
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)