Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0534
         (280 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04570.1 68417.m00670 protein kinase family protein contains ...    26   3.2  
At2g29980.1 68415.m03646 omega-3 fatty acid desaturase, endoplas...    26   3.2  
At4g35130.1 68417.m04994 pentatricopeptide (PPR) repeat-containi...    25   5.7  
At4g04540.1 68417.m00662 protein kinase family protein contains ...    25   5.7  
At4g22430.1 68417.m03241 hypothetical protein                          25   7.5  

>At4g04570.1 68417.m00670 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 654

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 18  ACLSRWDL*IFNNAHENV 71
           +C  RWDL  F+NA +NV
Sbjct: 240 SCYFRWDLYSFHNAFDNV 257


>At2g29980.1 68415.m03646 omega-3 fatty acid desaturase, endoplasmic
           reticulum (FAD3) identical to SP:48623
          Length = 386

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 36  DL*IFNNAHENVGCYVLH 89
           D  IFNN H ++G +V+H
Sbjct: 290 DYGIFNNIHHDIGTHVIH 307


>At4g35130.1 68417.m04994 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 804

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 45  IFNNAHENVGCYVL 86
           IF   H+N GCYVL
Sbjct: 626 IFKMEHDNTGCYVL 639


>At4g04540.1 68417.m00662 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 659

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 12  RLACLSRWDL*IFNNAHENV 71
           R +C  RWDL  F+ A +NV
Sbjct: 241 RPSCFFRWDLYAFHGAFDNV 260


>At4g22430.1 68417.m03241 hypothetical protein
          Length = 348

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 45  IFNNAHENVGCYVLHQSHLTCEGRMYK 125
           IF +  ++  CY+   +H TCE  MYK
Sbjct: 274 IFGDESKHHDCYI---NHRTCEKHMYK 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,721,164
Number of Sequences: 28952
Number of extensions: 87028
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)