Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0533
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   1.8  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.4  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   5.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   9.5  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.5  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  AHSPPGVKWLPKPIDIYNVNAATHLK 106
           A  PP +K    P+DI N++AA  LK
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 65  PIDIYN---VNAATH--LKI*VLRSQYSYNGCPILETETHYCFTA 184
           P+ +YN   +NA +H  LK  +      Y  CP+L +   +CF+A
Sbjct: 489 PLLLYNPGKINAFSHEMLKRGIAVVVVGYPACPLLTSRVRFCFSA 533


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 505 ASSVQEAGRISSQGSFVFEIQKRGLHLHLSPNSR 606
           + S  E+  +SS+GSF  E++  G+H H+S   R
Sbjct: 153 SKSGSESNALSSRGSF--ELEPHGIHRHVSRAKR 184


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 627 TGSFDIRSTIRR*MEMKTPLLNFKYERTL 541
           TG+FD+ S I+R  ++ +   N  Y R+L
Sbjct: 290 TGAFDVESDIQRAWDLYSSSANLGYTRSL 318


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 604 DYSAIDGDEDPSSEFQIRTNLVMKFFPL 521
           D  A + DE+ S+EFQI T   MK   L
Sbjct: 454 DDRAFETDEEESTEFQITTKDAMKAIEL 481


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 104 KI*VLRSQYSYNGCPILETETHYCFTAETGRVVVPTRVDSQGVLPPVKS 250
           KI   R Q     C + + + HY   A   R+V  ++    G+  PVK+
Sbjct: 14  KIKCSRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKN 62


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 70  RHLQRKCRHPPQDMSSKVS 126
           + L R  RHPP D + KVS
Sbjct: 178 KELTRVFRHPPPDFAGKVS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,893
Number of Sequences: 5004
Number of extensions: 49983
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)