Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0533
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    28   5.6  
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199...    27   9.9  

>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 197 PCLFLP*S-SNAFRFQGWGSRCNYTETLELIS*GGWRHLRCRCLWASVTT*HQVGCEL 27
           PC  L    +N  RF   G  C +  T+EL   G WR L+  CL     T  ++GC L
Sbjct: 177 PCSLLSDGIANYIRFLDLG-HCAFRPTVEL---GSWRSLKRLCLSFVHITGDELGCVL 230


>05_07_0267 +
           28818396-28818513,28819292-28819697,28819796-28819973,
           28820414-28820553,28820629-28821874,28821952-28822052,
           28822170-28822314,28822755-28822823,28822910-28822955,
           28823049-28823422,28823622-28823701,28823813-28823948,
           28824199-28824358,28824582-28824664,28825417-28825545
          Length = 1136

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 491 NQWSVHLLFRKREEFHHKVRSYLKF 565
           N WS+   FR  EE H +++ Y ++
Sbjct: 723 NSWSIKRRFRHFEELHRRLKEYSQY 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,205
Number of Sequences: 37544
Number of extensions: 372750
Number of successful extensions: 838
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)