Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0533
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_11487| Best HMM Match : Guanylate_cyc (HMM E-Value=2.3e-06)         30   1.4  
SB_58397| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 512 LFRKREEFHHKVRSYLKFR-RGVFISIYRRIVERI 613
           L RKREE+H+ V+ Y   R   ++   +R+I ERI
Sbjct: 199 LDRKREEYHNFVKQYYPTRYEEIYTDTFRQIFERI 233


>SB_11487| Best HMM Match : Guanylate_cyc (HMM E-Value=2.3e-06)
          Length = 360

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 205 TYPCGLTRGPTTSKVFYYRLRHY 273
           T  CGL RG +TS++  +R+RH+
Sbjct: 45  TGTCGLLRGCSTSRIVRFRIRHF 67


>SB_58397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +2

Query: 458 PLWRHVASLQYNQWSVHLLFRKREEFHHKVRSYLKFRRGVFISIYRRIVERISKDPVAPR 637
           PL + +A  QY+    HLL + ++E+ H      K        +  ++++R +K   AP 
Sbjct: 28  PLEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQSAPS 87

Query: 638 TLEGG 652
            +  G
Sbjct: 88  RITSG 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,247
Number of Sequences: 59808
Number of extensions: 396832
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)