Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0533
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        28   6.7  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        28   6.7  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    28   6.7  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    28   6.7  

>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   CCIDGWTSSQPTWC*VVTEAHRHLQRKCRHPP 102
           C +DG  SS   W    +  HR+  R C  PP
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVPP 302


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   CCIDGWTSSQPTWC*VVTEAHRHLQRKCRHPP 102
           C +DG  SS   W    +  HR+  R C  PP
Sbjct: 299 CKLDGGWSSWSDWSACSSSCHRYRTRACTVPP 330


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   CCIDGWTSSQPTWC*VVTEAHRHLQRKCRHPP 102
           C +DG  SS   W    +  HR+  R C  PP
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVPP 302


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   CCIDGWTSSQPTWC*VVTEAHRHLQRKCRHPP 102
           C +DG  SS   W    +  HR+  R C  PP
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVPP 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,761
Number of Sequences: 27780
Number of extensions: 295538
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)