Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0533
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24706.1 68414.m03104 expressed protein                             28   4.7  
At1g68800.1 68414.m07865 TCP family transcription factor, putati...    27   8.2  

>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 487  IQPMVCASSVQEAGRISSQGSFVFEIQKRGLH 582
            +QPM+C  +  E GR+   G F+FE  K   H
Sbjct: 1066 LQPMICCCTEYEVGRL---GRFLFETLKIAYH 1094


>At1g68800.1 68414.m07865 TCP family transcription factor, putative
           similar to cyc2 protein [Misopates orontium]; residues
           80 to 140 nearly identical to cyc1a protein (nuclear
           flower development gene cycloidea) GB:AAF07239
           [Antirrhinum siculum]
          Length = 317

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 10  CIDGWTSSQPTWC*VVTEAHRHLQRKCRHPPQDMSSKVSV*LQR 141
           C+DG TS +  W   V +  RH +      P+D   ++S+ + R
Sbjct: 73  CVDGSTSQEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIAR 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,238
Number of Sequences: 28952
Number of extensions: 280851
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)