Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0532
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.2  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   2.2  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.1  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   9.0  

>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 352 FCDLIFISRCYSFTVEVNSEHMLSTYFIRKIGTACG 245
           + + I+ SR Y+  +E+  E++L    I ++  +CG
Sbjct: 100 YVEAIWYSRAYAKRMEIKPEYLLPDRHINEVYVSCG 135


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 62  LC*GLSHVILLL*NWSAIINYSLCLLL*MNIVHLEVEIESSW 187
           LC  +   + L+ +  AII Y L     + + H+E+++E+SW
Sbjct: 568 LCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSW 609


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 89  ILHDLVLNITSLVTRQKCERIN-NNLKKKK 3
           +LH  +L +TS VTR++   IN  +L+++K
Sbjct: 373 LLHGRLLKVTSAVTRKEASDINQKSLQERK 402


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 346 DLIFISRCYSFTVEVNSEHMLSTYFIRKIGTACGIRTPRASLNTNASDFL 197
           D I    C+ +T E+   + L   ++  + TAC  +  RA ++   S+F+
Sbjct: 258 DFISPEFCHEWT-ELAERNGLQEEWLNILNTACNFKECRAIIHKECSEFI 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,254
Number of Sequences: 5004
Number of extensions: 51630
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)