Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0532
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114...    28   7.0  
05_01_0082 - 546134-546552,546755-547102,547192-547327,547404-54...    27   9.2  
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454...    27   9.2  
04_01_0014 - 231228-233179,233522-233714                               27   9.2  

>01_01_0124 -
           1145105-1145320,1145480-1145611,1146485-1146562,
           1147022-1147199,1147269-1147441,1147531-1147632,
           1147717-1147794,1148178-1148259,1148343-1148405,
           1150196-1150275,1150529-1150723,1150812-1151073,
           1151566-1151720,1151799-1151865,1151956-1152179,
           1152322-1152451,1153228-1153284,1153396-1153527,
           1153758-1154086
          Length = 910

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 165 KSKLSRRGLKDKKSDAFVLSDARGVRIPQAVPIFLMKYVL 284
           KS+L R  L+ +K+  F  S A+     + VPI++  YVL
Sbjct: 324 KSELERTDLQKEKTGVFSGSYAKNPATGEIVPIWVADYVL 363


>05_01_0082 -
           546134-546552,546755-547102,547192-547327,547404-547702,
           548434-548500
          Length = 422

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 279 RISLEKLVPPAGFE-HLVHRSTRMHRTSYPLGHDDSISTSKCTMFIHNNKQRE*LIIADQ 103
           R+ + + +P    E HL  RST     S+ L    ++  +K   F+H++K +   +I   
Sbjct: 149 RLLVYEFMPRGSLENHLFRRSTHFQPLSWNLRMKIALGAAKGLAFLHSDKVK---VIYRD 205

Query: 102 F*SSNI 85
           F +SN+
Sbjct: 206 FKTSNV 211


>04_04_0963 -
           29743363-29744450,29744729-29745043,29745116-29745477,
           29745947-29746013,29746111-29746954
          Length = 891

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 290 YVKYVFH*KNWYRLRDSNTSCIAQHECIGLLIL*ATTTQFRLLS-VQCSFITINKENN 120
           Y K++ H K    +    +S +  HECI L+I    + +F + S  Q +F  + K +N
Sbjct: 342 YTKFIDHVKKDESVSSHISSMLGAHECIQLVIYGLGSFEFDVKSQYQLAFALLLKADN 399


>04_01_0014 - 231228-233179,233522-233714
          Length = 714

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 352 IIICIFTGGRDFL*VHTSGYHHPSYFCREAIMR 450
           +++ I +G R    VH+S  HH +YF  +AI +
Sbjct: 604 VLLEIISGMRSLPNVHSSNSHHAAYFPVQAISK 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,052
Number of Sequences: 37544
Number of extensions: 333774
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)