Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0531
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    29   0.54 
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.8  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.1  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.1  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   6.7  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.7  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   8.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.8  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   8.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   8.8  

>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 66  TLTEPVYKESPYSVRTIQD--RGDSNHTMIRTPNFAPYYPTYAAIQ 197
           T  E +Y+ +   +R ++   +G + ++     ++ P+YPT+AA+Q
Sbjct: 78  TTPEVIYEAAKKGIRGVKSYPKGATTNSESGVESYEPFYPTFAAMQ 123


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 215 VKASEPPASKSSQENCKISISYCISEKFRKYYFLVEYFARISNF 346
           + ASE  + K++Q   +  I++  S  FRKY     ++  +SNF
Sbjct: 1   MNASEKLSQKAAQSVTRRFITWLKSPDFRKYLCSTHFWGPLSNF 44


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -3

Query: 291  SLIQYEILI-LQFS*DDLLAGGSEAF 217
            SL++ E++I  QF+ DD L+G SEAF
Sbjct: 1234 SLVRVELVINSQFNWDDHLSGTSEAF 1259


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 194 STTPASSVKASEPPASKSSQENCKISISYCISEKFRKYYFLVEYFARISNFAKFCDIFG 370
           +TTP+ +VKAS      S  EN ++SI     +       L E  A++    +   +FG
Sbjct: 90  TTTPSPAVKASPASTKLSVSENDRLSIPEITKDNLT----LTEIIAKLREMKEPIRLFG 144


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 140 HYDTHAKLRSVLSYVCSYSTTPASSVKASEPPASKSSQE 256
           H D  + L  V+  +C +  +P+S V  S+P    SS+E
Sbjct: 760 HVDPESDLGRVIK-ICDWYQSPSSDVLLSKPLQLNSSEE 797


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 NHTMIRTPNFAPYYPTYAAIQPPPLP 212
           NHT+    +F PY   ++A QPP LP
Sbjct: 299 NHTL---QSFHPYESLFSAGQPPSLP 321


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 233 PASKSSQENCKISISYCISEKFRKYYF-LVEYF 328
           P S + +E+  I ++YC S +FR +    VEYF
Sbjct: 294 PPSLADRESLSILVNYCKSIRFRCFRCRRVEYF 326


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/79 (26%), Positives = 30/79 (37%)
 Frame = +3

Query: 78  PVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPPLPQ*KPRSLQQANHLKR 257
           PV K    S  T   R   N ++  T           A  P  LP+ KPR  ++ N   R
Sbjct: 200 PVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRR-RKNNSQMR 258

Query: 258 IVKSVFRIV*AKSLESIIF 314
              +V + +  +  ES  F
Sbjct: 259 FCSTVLKELYKRQYESFAF 277


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 163 SLRIILRMQLFNHPRFLSKSLGASSKQIISREL 261
           ++  +L  Q +N PR  + S+  S KQIIS  L
Sbjct: 124 TVTFLLTAQPYNGPRIPNASVHGSPKQIISGTL 156


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +2

Query: 218 KASEPPASKSSQENCKISISYCISEKFRKYYFLVEYFARISNFAKFCDIFGC*SLFVF 391
           +A +  +  S ++     I   + ++ +K    ++Y + I+ F K C IFG   +F +
Sbjct: 52  QAEDDESLSSYEDYASRQIDDDLKKQRKKGITFIDYSSLITFFCKLCVIFGLGFVFTY 109


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 233 PASKSSQENCKISISYCISEKFRKYYFLVEY--FARISNFAKFCDIF 367
           P +   ++ CK +  YC       Y F  E   +  +SNF K+CD F
Sbjct: 318 PVNCEVEDTCKEA--YCTKCIINPYEFGFETGNYYTLSNFEKYCDNF 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,931
Number of Sequences: 5004
Number of extensions: 48563
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)