Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0531
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 30 1.3
12_02_1118 + 26210322-26212559 30 1.7
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.0
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 3.0
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 28 5.2
11_06_0660 - 26005210-26006150,26006440-26006467,26007307-260078... 28 6.9
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 6.9
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 27 9.1
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 27 9.1
04_01_0295 + 3926329-3926958 27 9.1
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 63 PTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPPLP 212
PT+ PYSV D+ S + P +A Y P Y P P P
Sbjct: 40 PTIPASYASAPPYSVGGYSDQPPSAPSYAPPPQYAGYAPPYNNPNPAPYP 89
>12_02_1118 + 26210322-26212559
Length = 745
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 48 FQSL---YPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFA 167
FQSL Y + + V +E+P SV + DRG H + N A
Sbjct: 519 FQSLGSAYHAINKRVLREAPCSVAVLVDRGLGGHAQVSAKNVA 561
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Frame = +2
Query: 161 LRSVLSYV-----CSYSTTPASSVKASEPPASKSS 250
LRSV YV +YS+TP+S+++ + PPA+ S
Sbjct: 464 LRSVFPYVHGRLPAAYSSTPSSTLRPAPPPAAPPS 498
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 156 PNFAPYYPTYAAIQPPPLPQ 215
P FAP++ + A+ PPP PQ
Sbjct: 61 PQFAPHFVPFHAVGPPPPPQ 80
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 156 PNFAPYYPTYAAIQPPPLP 212
PN YYP Y PPP P
Sbjct: 60 PNLPQYYPQYGNFYPPPPP 78
>11_06_0660 -
26005210-26006150,26006440-26006467,26007307-26007838,
26008863-26009008
Length = 548
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 LKICTGKR-YFTVTWRSENLTRCGDNRKQTNC 602
L++ TGK+ YF+ W+ + C + K+ C
Sbjct: 405 LEVLTGKKPYFSEEWKEKKTEECVEEEKREEC 436
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 162 FAPYYPTYAAIQPPPLP 212
+A YYP+ +QPPP P
Sbjct: 536 YASYYPSVTPVQPPPPP 552
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 167 SVLSYVCSYSTTPASSVKASEPPASKSSQENCKISISYCISEK 295
+V+ Y S PASS EP +S EN ++S EK
Sbjct: 166 AVVFYKNPVSVPPASSAMKEEPSSSTEESENGEVSTGNQADEK 208
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 218 LLRKRGWLNSCIRRIIRSEVWRAYHSVVTVAP 123
LLR+ G+LNS +RR+I ++ VVTV P
Sbjct: 1196 LLREEGYLNSTLRRVIMLKI------VVTVGP 1221
>04_01_0295 + 3926329-3926958
Length = 209
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 365 KYHKILQNL--RFVQNILPKNNTF*TFRLYNT 276
KY LQN+ +F+QN L K TF R +NT
Sbjct: 163 KYGPNLQNILVKFMQNFLEKETTFPRNRYWNT 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,296
Number of Sequences: 37544
Number of extensions: 268730
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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