Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0531
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 35 0.046
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 29 3.0
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22) 29 3.0
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 29 3.0
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 29 4.0
SB_32856| Best HMM Match : rve (HMM E-Value=0.11) 29 4.0
SB_15543| Best HMM Match : DUF1311 (HMM E-Value=6.2) 29 4.0
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 28 5.3
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064) 28 7.0
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 27 9.3
SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 21 LNG*NSQPPFQS----LYPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYA 188
+N N PP+ S YP P Y ES + +I+D GD + NF P YP
Sbjct: 229 MNDPNQAPPYYSQQGSAYPP--PPSYAESVFGGASIRDDGDHQDGAMGDMNFTPCYPFVN 286
Query: 189 AIQPPP 206
QPPP
Sbjct: 287 NYQPPP 292
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 35.1 bits (77), Expect = 0.046
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 610 LGRQFVCFLLSPHRVK-FSDRQVTVKYLLPVHILSPKFKKSNENDKEE 470
+G FV FL+ H VK F++ TV +HIL K KK ND EE
Sbjct: 282 IGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKEESNDNEE 329
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +3
Query: 51 QSLYPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPPLPQ*KPRS 230
+ +YP + P S + T Q + +T RT P YPT PPP PQ P
Sbjct: 683 RDMYPAVFSPTLPASRSTTVTQQLTPQTTYTQ-RTAQGLPSYPTLPP-PPPPPPQTTPFG 740
Query: 231 LQQANH 248
A+H
Sbjct: 741 YSSASH 746
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 525 GKRYFTVTWRSENLTRCGDNRKQTNCLP 608
GK+ + W +++ C D R + NC+P
Sbjct: 33 GKKCIPLKWICDSVADCDDKRDERNCIP 60
>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
Length = 254
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 63 PTLTEPVYKESPY-SVRTIQDRGDSNHTMIRTPNFA-PYYPTYAAIQPPPL 209
PT+ Y P + TI D S H ++RTP A +Y + +Q P +
Sbjct: 43 PTIANTHYSGHPLLQIPTIADTHYSGHPLLRTPTIANTHYSGHPLLQTPTI 93
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 525 GKRYFTVTWRSENLTRCGDNRKQTNCLP 608
GK+ + W +++ C D R + NC+P
Sbjct: 846 GKKCIPLKWICDSVADCDDKRDERNCIP 873
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 498 KKAMRMTRKNFMSDLNYHXXXXXXXXXFKWVKF*ISNTNND*QPKISQNFAKFE 337
K+ M TR + ++DL Y +W+ + +NT+ D K+ + FA+ +
Sbjct: 96 KRDMEYTRMD-VTDLKYDDESFNVVFDKQWLDYTFTNTSEDILKKVDKTFAEIQ 148
>SB_32856| Best HMM Match : rve (HMM E-Value=0.11)
Length = 323
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +3
Query: 66 TLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPPLPQ*KP 224
TL + + P R +QD D HT R NF YP PP P KP
Sbjct: 206 TLIPFIQTKMPRGHRFLQDN-DPKHTSNRCKNFYQDYPINWWKTPPESPDLKP 257
>SB_15543| Best HMM Match : DUF1311 (HMM E-Value=6.2)
Length = 163
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 452 IITSLVYFSFFFLNG*NSESQTRTTISNQKYHK 354
II +YF+F F NG +S + I+ YHK
Sbjct: 3 IIQVCLYFTFIFWNGFSSGEDVQQNIAGVVYHK 35
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 519 CTGKRYFTVTWRSENLTRCGDNRKQTNC 602
C R + TW + CGDN + NC
Sbjct: 14 CDNGRCISATWVCDTENDCGDNSDEMNC 41
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 519 CTGKRYFTVTWRSENLTRCGDNRKQTNCLPN 611
C KR WR + C DN + NC PN
Sbjct: 558 CADKRCILSRWRCDGDRDCADNSDEINC-PN 587
>SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064)
Length = 617
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 158 KLRSVLSYVCSYSTTP--ASSVKASEPPASKSSQENC 262
+L S LS+ SY+TT A S +A PP + S +C
Sbjct: 305 QLSSPLSHAASYTTTTQIAPSYQAPPPPQAPHSDSSC 341
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 519 CTGKRYFTVTWRSENLTRCGDNRKQTNCLPN 611
C KR WR + C DN + NC PN
Sbjct: 713 CADKRCILSRWRCDGDRDCADNSDEINC-PN 742
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Frame = +3
Query: 519 CTGKRYFTVTWRSENLTRCGDNRKQTNCL 605
C Y W+ + CGD+ + NC+
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNCV 452
>SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 YYPTYAAIQPP-PLPQ*KPRSLQQANHLKRIVKSVFRI 281
Y+P A+Q P P+ PR + ANH RI SVFR+
Sbjct: 176 YFPFPTALQLPLEHPKLLPRGM--ANHTSRISISVFRV 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,260
Number of Sequences: 59808
Number of extensions: 331128
Number of successful extensions: 899
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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