Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0531
         (620 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    31   4.3  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    31   4.3  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    31   4.3  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 519  CTGKRYFTVTWRSENLTRCGDNRKQTNC 602
            C   R   + WR +N   CGDN  +  C
Sbjct: 984  CNNGRCININWRCDNDNDCGDNSDEAGC 1011


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 519  CTGKRYFTVTWRSENLTRCGDNRKQTNC 602
            C   R   + WR +N   CGDN  +  C
Sbjct: 984  CNNGRCININWRCDNDNDCGDNSDEAGC 1011


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 519  CTGKRYFTVTWRSENLTRCGDNRKQTNC 602
            C   R   + WR +N   CGDN  +  C
Sbjct: 984  CNNGRCININWRCDNDNDCGDNSDEAGC 1011


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,264,334
Number of Sequences: 237096
Number of extensions: 1536151
Number of successful extensions: 3886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)