Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0531
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81120-2|CAB03344.2| 426|Caenorhabditis elegans Hypothetical pr... 34 0.094
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical p... 28 4.7
U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical pr... 28 4.7
U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF016419-2|AAG24055.2| 325|Caenorhabditis elegans Serpentine re... 28 4.7
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 28 6.2
Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical pr... 27 8.2
AC199169-12|ABO33253.1| 478|Caenorhabditis elegans Hypothetical... 27 8.2
>Z81120-2|CAB03344.2| 426|Caenorhabditis elegans Hypothetical
protein T12D8.4 protein.
Length = 426
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 57 LYPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTY 185
LYPT+ P YKES + I + + +FAP YP Y
Sbjct: 384 LYPTMPSPYYKESFFGASDISE--EKEQAQFGEASFAPKYPFY 424
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 206 ASSVKASEPPASKSSQENCKISISYCISEKFRK 304
A+ + EPP ++ S+E C ++ +CIS K+ K
Sbjct: 848 ATPTEEEEPPKTEPSKERCGVAKGHCISAKYEK 880
>U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical
protein W02C12.3g protein.
Length = 437
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 137 PHYDTHAKLRSVLSYVCSYSTTPASSVKASEPPASKSSQ 253
P + A R + SYV S + SS K+ PP++K S+
Sbjct: 46 PRWSPSADDRRLFSYVSSMRSDSNSSSKSPSPPSAKMSK 84
>U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical
protein W02C12.3a protein.
Length = 498
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 137 PHYDTHAKLRSVLSYVCSYSTTPASSVKASEPPASKSSQ 253
P + A R + SYV S + SS K+ PP++K S+
Sbjct: 46 PRWSPSADDRRLFSYVSSMRSDSNSSSKSPSPPSAKMSK 84
>U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical
protein W02C12.3f protein.
Length = 473
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 137 PHYDTHAKLRSVLSYVCSYSTTPASSVKASEPPASKSSQ 253
P + A R + SYV S + SS K+ PP++K S+
Sbjct: 46 PRWSPSADDRRLFSYVSSMRSDSNSSSKSPSPPSAKMSK 84
>AF016419-2|AAG24055.2| 325|Caenorhabditis elegans Serpentine
receptor, class j protein32 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 260 CKISISYCISEKFRKYYFLVEYFARISNFAKFCDIF 367
C I ++Y K Y FL+ YFA + F DIF
Sbjct: 24 CFIYLTYAEKFKLGNYAFLLYYFAIFNIFHSLLDIF 59
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 24 NG*NSQPPFQSLYPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPP 203
+G N QPP S P+ SP++V R S + + P P P AA PP
Sbjct: 289 SGENGQPP--SPAGRRIVPLSMPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPPPP 346
Query: 204 PLP 212
+P
Sbjct: 347 GIP 349
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 24 NG*NSQPPFQSLYPTLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPP 203
+G N QPP S P+ SP++V R S + + P P P AA PP
Sbjct: 289 SGENGQPP--SPAGRRIVPLSMPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPPPP 346
Query: 204 PLP 212
+P
Sbjct: 347 GIP 349
>Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical
protein C41G6.6 protein.
Length = 364
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 236 ASKSSQENCKISISYCISEKFRKYYFLVEYFARISNFAKFCD 361
A+K + ++ +CIS + +YY +++F ++ +A +C+
Sbjct: 171 ATKFDLQLYELGPKFCISVEDVEYYTYIDHFDVVTLYANYCE 212
>AC199169-12|ABO33253.1| 478|Caenorhabditis elegans Hypothetical
protein F38A1.14 protein.
Length = 478
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 KLRSVLSYVCSYSTTPASSVKASEPPASKSSQENCKISISYCISEKF 298
K S+ +VCSY+ TPA ++ P S + K+++ + S F
Sbjct: 135 KNSSLTWFVCSYAATPAPTIS----PEDNSCKPGKKVTLLFAYSNDF 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,250
Number of Sequences: 27780
Number of extensions: 265660
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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