Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0531
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    29   3.3  
At2g42130.2 68415.m05212 expressed protein contains weak hit to ...    28   4.3  
At2g42130.1 68415.m05211 expressed protein contains weak hit to ...    28   4.3  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    28   5.7  
At3g51620.2 68416.m05659 expressed protein                             27   7.6  
At3g51620.1 68416.m05658 expressed protein                             27   7.6  

>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 156 PNFAPYYPTYAAIQPPPLP 212
           PN +P++P Y +  PPP P
Sbjct: 62  PNASPFFPLYPSSPPPPSP 80


>At2g42130.2 68415.m05212 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 269

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 209 KRGWLNSCIRRIIRSEV 159
           K+GW NSC RR++R+ V
Sbjct: 35  KQGWKNSCRRRVLRAMV 51


>At2g42130.1 68415.m05211 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 270

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 209 KRGWLNSCIRRIIRSEV 159
           K+GW NSC RR++R+ V
Sbjct: 35  KQGWKNSCRRRVLRAMV 51


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 66  TLTEPVYKESPYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPP 206
           T+T   Y  SPYS          +H   ++P +AP+   Y  I PPP
Sbjct: 44  TVTSYPYS-SPYSSPQTPHYNSPSHEH-KSPKYAPHPKPYVYISPPP 88


>At3g51620.2 68416.m05659 expressed protein
          Length = 542

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 126 GDSNHTMIRTPNFAPYYPTYAAIQPPPLPQ*KPRSLQQANH 248
           G +NH   + P+F P  P    +  PP    KPR   + +H
Sbjct: 468 GSTNHPYEKAPDFRPTEPLPVEVLSPPEDS-KPRDSIEGHH 507


>At3g51620.1 68416.m05658 expressed protein
          Length = 755

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 126 GDSNHTMIRTPNFAPYYPTYAAIQPPPLPQ*KPRSLQQANH 248
           G +NH   + P+F P  P    +  PP    KPR   + +H
Sbjct: 694 GSTNHPYEKAPDFRPTEPLPVEVLSPPEDS-KPRDSIEGHH 733


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,231
Number of Sequences: 28952
Number of extensions: 234883
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)