Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0526
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    28   1.4  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    27   1.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   1.9  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   5.8  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    26   5.8  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 556 ATLPASPESHSLTPGSRAWNLNLTNDQM 639
           A LPA+  +HS  PG   ++  +TND+M
Sbjct: 327 AFLPATVPTHSAPPGFVPYDFPITNDKM 354


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 208 VGCWLPKQLEWSMNFISTLSWRL 140
           +G W  K+ EW M  I+TL+ RL
Sbjct: 53  LGTWQVKRREWKMGIINTLTERL 75


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 200 TTNKNAK*ASRSLPTPSAPHVWKQCDHCLHP 292
           T N N+   SRS      PHVW      LHP
Sbjct: 92  TANYNSASISRSKAKDEKPHVWHHEGKSLHP 122


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 489 PICFLYFQIGITSFGSAQGCQRGHPAGFA 575
           PI + Y QI   + GSA GC   HP G A
Sbjct: 161 PIRYKYLQI-FENKGSAMGCSNPHPHGQA 188


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 QTALVMTWRLTWRFCWLLAPEAAGMVNEFYQHSLMAPS 138
           +T ++   R+   F W+LA  A  +V   Y + + AP+
Sbjct: 62  RTVVIFILRIVSLFLWILADPAILLVQSVYWYFIRAPA 99


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 120 CVDSAT-----RRRHERVLIKFIDHSSCFGSQQPTKTPS 221
           C  SAT     R  +   L K ++HSS   S Q TKTPS
Sbjct: 645 CARSATSAGLPRFEYHTSLSKSLEHSSTPASLQATKTPS 683


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 165 LSALSHGAF*SRSQRRIQNESINYLF 88
           + AL+H  F   +  R+ N+S+ Y+F
Sbjct: 125 IQALTHPTFYKETAGRVSNDSLGYIF 150


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 523 VIPIWKYKKQMGNVVSH 473
           + P+W+ +K + NV+SH
Sbjct: 609 LFPLWQGRKSLANVISH 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,285
Number of Sequences: 5004
Number of extensions: 53472
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)