Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0526
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37650.1 68415.m04618 scarecrow-like transcription factor 9 (...    30   1.6  
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At5g44300.1 68418.m05422 dormancy/auxin associated family protei...    28   5.0  
At5g56220.1 68418.m07016 expressed protein                             28   6.6  
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,...    27   8.7  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   8.7  

>At2g37650.1 68415.m04618 scarecrow-like transcription factor 9
           (SCL9) identical to cDNA  scarecrow-like 9 (SCL9) mRNA,
           partial cds GI:4580524
          Length = 718

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 505 TSRSVSHRSDQLKVAREATLPASPESHSLTPGS--RAWNLNLTNDQMDSII 651
           T  S++  S  +   R + LP  P SHS TP +    +N NL++D +++++
Sbjct: 3   TEPSLTGISGMVNRNRLSGLPDQPSSHSFTPVTLYDGFNYNLSSDHINTVV 53


>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 347

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 174 DH--SSCFGSQQPTKTPSEPPGHYQRRLRRTFGNNVIIASTLCVDGSNGRSTCSGDS 338
           DH  S CFG+   +   S    H + R+  T  NN++       D  +G ST + DS
Sbjct: 31  DHFLSPCFGAAITSNDFSSQENHLKSRMTCTDNNNIVFGQRE-ADSDSGGSTVTMDS 86


>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 393

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 174 DH--SSCFGSQQPTKTPSEPPGHYQRRLRRTFGNNVIIASTLCVDGSNGRSTCSGDS 338
           DH  S CFG+   +   S    H + R+  T  NN++       D  +G ST + DS
Sbjct: 31  DHFLSPCFGAAITSNDFSSQENHLKSRMTCTDNNNIVFGQRE-ADSDSGGSTVTMDS 86


>At5g44300.1 68418.m05422 dormancy/auxin associated family protein
           contains Pfam profile: PF05564 dormancy/auxin associated
           protein
          Length = 114

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 484 HFPFVSCTSRSVSHRSDQLKVAREATLPASPESHSLTPGS 603
           H   +S +  S+++ ++ + VA   +LPASP +  +TPGS
Sbjct: 24  HLRRISTSLTSLNNTTEGMSVAGSVSLPASPAT-PVTPGS 62


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 276 SHCFQTCGADGVGNDLEAHLAFLLV 202
           SH F  CG  G+G   E   AFLLV
Sbjct: 734 SHTFAWCGGCGLGRRSEEDAAFLLV 758


>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 513

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 400 NKNTVLTS*RLPPLPMVRGPP-ESPLQVLRPLEP 302
           ++NT  TS   PP P+   PP +   Q L+PL+P
Sbjct: 408 HQNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQP 441


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 367 PPLPMVRGPPESPLQVLRPLEPS 299
           PP P + GPP + + V  P EPS
Sbjct: 77  PPSPSLTGPPPTTIPVSPPPEPS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,931
Number of Sequences: 28952
Number of extensions: 295496
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)