Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0525
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 237 DDCEAFQRSDYDKGFLQLLSQLTSVGNI 320
           DD E+  +S    G L  LS LTS G +
Sbjct: 672 DDAESLNQSISSPGALSGLSSLTSPGGM 699


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 237 DDCEAFQRSDYDKGFLQLLSQLTSVGNI 320
           DD E+  +S    G L  LS LTS G +
Sbjct: 564 DDAESLNQSISSPGALSGLSSLTSPGGM 591


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  EYSNKLKKNHKMGMEKNGNAEGKLSEYL 144
           ++  +  KN K+G+ ++     KLSE L
Sbjct: 425 KFYEQFSKNIKLGIHEDSQNRAKLSELL 452


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,978
Number of Sequences: 336
Number of extensions: 2774
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)