Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0525
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    44   2e-05
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    28   0.99 
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.3  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    26   5.3  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.2  

>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = +3

Query: 372 YYVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLEDVVVNDTYR 509
           YY+ V+ED   + +IG ATL +E+KF+    + G +E+V+V+  ++
Sbjct: 9   YYIIVVEDLESHHVIGTATLFLERKFLRGKGICGHIEEVIVHPDHQ 54



 Score = 32.3 bits (70), Expect = 0.061
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +2

Query: 506 QGKQLGKLIVVTVSLLAQELGCYKMSLDC 592
           Q K +GKL+V+T+  LA  L  YK+ LDC
Sbjct: 54  QRKAIGKLMVLTLIKLAFSLNSYKVILDC 82


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/63 (19%), Positives = 31/63 (49%)
 Frame = +3

Query: 225 RRGLDDCEAFQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVIEDTRI 404
           R  +D    +Q  +  +   + + ++ +  ++ +     ++T+ K + G Y + +ED +I
Sbjct: 375 RLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKKKYTRSKRNDGLYTSAVEDIKI 434

Query: 405 NKL 413
           N L
Sbjct: 435 NSL 437


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 218 TALILG*NFAGLLLKSSLFNISGG*R 141
           T L+L    AG  +++SLFN+ GG R
Sbjct: 19  TGLLLALGLAGFAVQTSLFNVDGGHR 44


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 378 VTVIEDTRINKLIGAATLTIEQKFIHNCSL 467
           +TV  D   NK + A T+T+E   IH   L
Sbjct: 629 MTVARDLSYNKRLNAKTVTLEGTVIHKTGL 658


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 136 RRVSLPHFRSFPCPFCGFFLIYLSIQTDISILYLPIPILFNY 11
           RR+  PHF  F   +  FF I L I T I + Y    I +N+
Sbjct: 33  RRIFRPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNIGWNF 74


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 634 NPKASSKNFINFTLT 590
           NP+ S+K F NFTLT
Sbjct: 765 NPRVSTKTFDNFTLT 779


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 PEILKRLDFSKSPAKFHPKISAVDP 225
           P +L  LDF  S  + HP + ++DP
Sbjct: 364 PSLLAALDFRSSNEEQHPGLRSLDP 388


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 572 SIPALEREAIRLPQLIYQVAFPVSVINYDVF*TAA 468
           +I   ER A RLPQ+    + PV++  + +F T A
Sbjct: 27  TIAEQERNASRLPQMFQMSSHPVALFFFLLFRTGA 61


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 151 PEILKRLDFSKSPAKFHPKISAVDPGEDWMIVRPFN 258
           PE + ++ F+K  AK     S + PGE++ ++ PF+
Sbjct: 73  PEDVMQVSFAKDWAK-----SRIKPGEEYPVIYPFD 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,728
Number of Sequences: 5004
Number of extensions: 48066
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)