Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0525
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     56   2e-08
02_05_0531 + 29811356-29811856                                         47   1e-05
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716...    28   5.4  
07_01_0086 + 672173-673603                                             28   7.2  

>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +3

Query: 261 SDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGG-YYVTVIEDTRINKLIGAATLTI 437
           +D  +GFL LL+QL+    +T + +  RF ++   G  + V V ED    +L  A  + +
Sbjct: 30  ADISRGFLGLLNQLSPSPPLTEEAFRARFEELAALGADHLVLVAEDAATGRLAAAGAVLV 89

Query: 438 EQKFIHNCSLRGRLEDVVVNDTYRESNL 521
           E+KFI  C   G +EDVVV+   R   L
Sbjct: 90  ERKFIRRCGRVGHVEDVVVDAAARGRGL 117


>02_05_0531 + 29811356-29811856
          Length = 166

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
 Frame = +3

Query: 255 QRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSG-GYYVTVIEDTRI--NKLIGAA 425
           + +D++KGF+ LLSQL++  ++T  ++   F  +   G  + + V ED     ++++   
Sbjct: 27  EATDHEKGFVALLSQLSACPDLTASEFAACFADLAALGDDHVILVAEDPAAPESRILATG 86

Query: 426 TLTIEQKFIHNCSLRGRLEDVVVNDTYRESNL 521
            L +E+KF+      G +EDVVV+   R   L
Sbjct: 87  CLFVERKFLRGGGKVGHVEDVVVDAAARGRGL 118



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 506 QGKQLGKLIVVTVSLLAQELGCYKMSLDC 592
           +G+ LG  +V  +  +A+E GCYK+ LDC
Sbjct: 114 RGRGLGLRVVRRLVEIAKEAGCYKVILDC 142


>12_01_1048 +
           10770461-10770612,10770721-10770730,10771457-10771624,
           10771668-10772017,10772107-10772508,10772940-10773318,
           10773801-10774046
          Length = 568

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -3

Query: 458 VVDEFLFDGQRCCTYEFINARVLYYGHIVTARVFHLSETVIILFSRNISHAC*LTEELQE 279
           +V  F+  G+ CC  E   A +   GH +         T     S  + H   L EE + 
Sbjct: 166 LVLRFIMAGEACCRREKSQA-IAGPGHSIAVTTSGAVYTFGSNSSGQLGHGS-LEEEWRP 223

Query: 278 TLIVIRALKGLTIIQSSPGSTALIL 204
              +IR+L+G+ IIQ++ G+   +L
Sbjct: 224 R--IIRSLQGIRIIQAAAGAGRTML 246


>07_01_0086 + 672173-673603
          Length = 476

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 115 NAEGKLSEYLYPPEILKRLDFSKSPAK 195
           N  G L E+++PPE+   L F   PAK
Sbjct: 313 NRVGPLYEHVFPPELAPSLSFVGIPAK 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,677
Number of Sequences: 37544
Number of extensions: 300104
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)