Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0525
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.27 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 133 RVSLPHFRSFPCPFCG 86
           RVS P  R++ CP CG
Sbjct: 64  RVSCPVLRAYTCPICG 79


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 593 NSRETFYSIPALEREAIRLPQLIYQVAFP 507
           NS++ +Y+I  +E+  + +P  IY   FP
Sbjct: 319 NSKKLYYNIINIEQIPVPVPVPIYCGNFP 347


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 593 NSRETFYSIPALEREAIRLPQLIYQVAFP 507
           NS++ +Y+I  +E+  + +P  IY   FP
Sbjct: 330 NSKKLYYNIINIEQIPVPVPVPIYCGNFP 358


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 109 SFPCPFCGFFLIYLSIQTDISILYLPIPILFNYR 8
           S   P    +L++  I   +SIL   I I +N+R
Sbjct: 290 SLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFR 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,427
Number of Sequences: 438
Number of extensions: 3605
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)