Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0523
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0884 - 6956337-6956431,6956514-6957651                           29   2.8  
01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887     28   4.9  
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788...    27   8.5  
03_05_0266 + 22537578-22538081                                         27   8.5  

>01_01_0884 - 6956337-6956431,6956514-6957651
          Length = 410

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 229 PCSGPRP-PAVTRCRVPTAASPTVEYDALAAPRVLACGTRPP 351
           P   P P P+    + PTAA+      A   P V+ACG R P
Sbjct: 265 PSPSPSPSPSPAPTQPPTAAAAAAVAPAPPQPVVVACGVRAP 306


>01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887
          Length = 302

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  DPGSEARGWSCGVDCVEVNNKIE 1
           +  S +  W+CGV   EVNN +E
Sbjct: 218 ESSSNSSNWNCGVGAPEVNNALE 240


>11_02_0059 -
           7883980-7884141,7884423-7884467,7884629-7884715,
           7885746-7885874,7885995-7886151,7886248-7886350,
           7887050-7887103,7887334-7887451,7888549-7888700,
           7890166-7891852
          Length = 897

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 274 PTAASPTVEYDALAAPRVLACGTRPPCC 357
           P  +  T    A  +P VLACG+  P C
Sbjct: 161 PAVSGATPPIHASISPEVLACGSATPAC 188


>03_05_0266 + 22537578-22538081
          Length = 167

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 350 GGRVPQASTRGAASASYSTVGDA--AVGTRQRVTAGGRGPLHG 228
           GGR+P  ST G   +    +GD   AV +   + A   G L G
Sbjct: 106 GGRIPSPSTTGTTESPAGALGDCAEAVASAADLAARAAGRLDG 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,118,764
Number of Sequences: 37544
Number of extensions: 229681
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)