Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0523
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22)            29   3.7  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   6.5  
SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22)
          Length = 374

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 241 PRPPAVTRCRVPTAASPTVEYDALAAPRVLACGTRPPCCRQRF 369
           P+PP  T   + T A PT       +PR LA    PP  RQ F
Sbjct: 301 PQPPITTNHSIGTGAHPTPSASPQNSPRCLALLQWPP--RQSF 341


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 359  RQHGGRVPQASTR-GAASASYSTVGDAAVGTRQRVTAGGR 243
            +   GRV  A TR G A    S   D +VG R+R  +GGR
Sbjct: 2083 KSDSGRVESAPTRNGNAKIDDSIDVDVSVGGRERPRSGGR 2122


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 184 NYLQRVNLIYTIYSLPCSGPRPPAVTRCRVPTAASPT 294
           N ++   +  ++ S   SG  PP   R  VP+AA PT
Sbjct: 680 NVIEHSAVYQSVGSSETSGHSPPTANRGTVPSAAQPT 716


>SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 187 YLQRVNLIYTI-YSLPCSGPRPPAVTRCRVPTAASPTVEYDALAAPRVLACGTRPPCCRQ 363
           +LQ V L  ++ YSLP S  R  A+ R R  T  +  +   ALA+ + L    +   CR 
Sbjct: 43  FLQYVPLDRSVSYSLPYSTYRKIALCRTRFLTVRTVRLVCVALASLQYLPTYRKIALCRT 102

Query: 364 RFV 372
           RF+
Sbjct: 103 RFL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,983
Number of Sequences: 59808
Number of extensions: 266130
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)