Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0522
         (475 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RKY1 Cluster: Axonemal heavy chain dynein type 3; n=8...    37   0.26 
UniRef50_Q9XMS2 Cluster: Orf1386; n=2; Alveolata|Rep: Orf1386 - ...    31   9.8  

>UniRef50_Q7RKY1 Cluster: Axonemal heavy chain dynein type 3; n=8;
            cellular organisms|Rep: Axonemal heavy chain dynein type
            3 - Plasmodium yoelii yoelii
          Length = 3690

 Score = 36.7 bits (81), Expect = 0.26
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 472  GLVVAPRVVWSAARYSYTPVTNTLPPVFDPVFNYY*FVQFSCAIFKKILKYCLNFVFQY 296
            GL++      S A Y  + + NTLP  FDP+  +     F C   K +L  C+N +F Y
Sbjct: 1081 GLIILNNCDLSIASYICSYI-NTLPNNFDPIHKHILLNLFMCLFHKSLLFICINNLFVY 1138


>UniRef50_Q9XMS2 Cluster: Orf1386; n=2; Alveolata|Rep: Orf1386 -
            Tetrahymena pyriformis
          Length = 1386

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 364  FVQFSCAIFKKILKYCLNFVFQYFCTL*HYNIFT 263
            +V F   +F+  LKYC+ F F ++ T+  Y+I T
Sbjct: 1019 YVAFPLVMFELALKYCIYFYFIFYFTINFYDIGT 1052


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,232,089
Number of Sequences: 1657284
Number of extensions: 7588643
Number of successful extensions: 13779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13775
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)