Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0522
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.4  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   4.5  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 104  YVRCCFPYLFRPLQNTVR-LLITSQI 30
            Y  CCF YLF+   N  + LLI  Q+
Sbjct: 1998 YASCCFLYLFKSSSNNPQELLIKEQM 2023


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 442 SAARYSYTPVTNTLPPVFDPVFN--YY*FVQFSCAIFKKI 329
           S   Y  +P  +    + DP+    Y  F  F+CA+F K+
Sbjct: 339 SGLSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,330
Number of Sequences: 5004
Number of extensions: 35299
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)