Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0522
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27654| Best HMM Match : SEC-C (HMM E-Value=4.5)                     32   0.28 
SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)                     31   0.65 
SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)             29   2.6  
SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)         27   6.0  

>SB_27654| Best HMM Match : SEC-C (HMM E-Value=4.5)
          Length = 286

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 152 ASSVPGRSNVKFVLSGYVRCCFPYLFRPLQNTVRLLITSQI 30
           A   PG SNVKFVLS +V  C   +F    N   + +T+Q+
Sbjct: 26  ALHTPGSSNVKFVLSVFV--CVEAIFMSSNNNDNIAVTAQM 64


>SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)
          Length = 495

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 463 VAPRVVWSAARYSYTPVTNTLPPVFDPVFNYY*FVQFSCAI 341
           V    VW    + Y       PP F PV  Y+ F+ F  ++
Sbjct: 330 VCTTFVWMLGEFEYKSTFVDSPPTFQPVLFYFFFIMFGVSV 370


>SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)
          Length = 358

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = -1

Query: 412 TNTLPPVFDPVFNYY*FVQFSCAIFKKILKYCLNFVFQYFCTL*HYNIFT*NLTLSVPNN 233
           T   P     VF Y   V F  A+F + L  CL  VF+Y   +  + +FT    L +P  
Sbjct: 283 TRCFPLCLPGVFRYVYPVSF--AMFTRCLSLCLPGVFRYVYPV-FFAMFTRCFLLCLPGV 339

Query: 232 SRYALYP 212
            RY +YP
Sbjct: 340 VRY-VYP 345


>SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 51  TYSVLKRPEQIRETTSYITTKYKLYVASSR 140
           TY    R  Q R +T  I  KY LY A+S+
Sbjct: 285 TYEKANRVVQERNSTDQIQIKYNLYAAASK 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,199
Number of Sequences: 59808
Number of extensions: 230557
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)