Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0522
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    29   1.7  
Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical ...    28   3.0  

>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/81 (27%), Positives = 40/81 (49%)
 Frame = -2

Query: 456 LELYGVLRDIHTRPLPIRYHLCLIQFSIIINLSSFPVQFSKKY*NIVLILFFNISALYST 277
           L +  V  D+    + + Y   L QF  + N S +  +FS K+  + LI+F  +    S 
Sbjct: 151 LSVLSVPEDLKFDFVEMNYPDLLPQFQKLPNFSIY--EFSSKF--LALIIFSILGGFLSF 206

Query: 276 TIFLRKI*RFLYLITLVMLCI 214
           T+F+  +   L ++T++ L I
Sbjct: 207 TVFILVLVNILRMLTILKLKI 227


>Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 170 YILRNNASSVPGRSNVKFVLSGYVRCCF--PYLF 75
           Y +++N S +P  SNV   LS   RCC   P++F
Sbjct: 105 YSIKHNLSRLPFLSNVTQYLSKIFRCCVIKPFVF 138


>AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 170 YILRNNASSVPGRSNVKFVLSGYVRCCF--PYLF 75
           Y +++N S +P  SNV   LS   RCC   P++F
Sbjct: 105 YSIKHNLSRLPFLSNVTQYLSKIFRCCVIKPFVF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,826
Number of Sequences: 27780
Number of extensions: 194862
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)