Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0521
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.27 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.63 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 295 VPY-RPSRPDGGAFPDRGEHGARSIISCETGLAHTGAIVYYQRGNF 161
           VPY R  RPD   + +     + ++I+    ++HTG +V+   G F
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIF 127


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 77  PRPPNSCSPGDPLVLERPPPR 15
           PR P    PGD  + +RP PR
Sbjct: 913 PRSPGRAWPGDSDIRQRPIPR 933


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 207 PVSQEMMLLAPCSPRSGKAPPS 272
           PVS   ++ A  SP  G+ PPS
Sbjct: 391 PVSMSALVSAVRSPAGGQLPPS 412


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 430  LRVAPEEHPVLLTEAPLNPKANREKM 507
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 201  ARPVSQEMMLLAPCSPRSGKAPPSGRDGRYGTEGLL 308
            A+P SQE     P +   G  P  G+   Y  + L+
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRGKYRNYDRDSLV 1049


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 632 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 540
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 194 GMCKAGFAGD 223
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,456
Number of Sequences: 438
Number of extensions: 4784
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)