Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0518
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   1.0  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   3.1  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 294 LEFANQVLAIVSLEVSAISRRCTMPRRQSTSM 199
           L + +  L + SL+ +    RCT+P+R  TSM
Sbjct: 212 LYYISSTLTLTSLDQNIRCTRCTIPKRVITSM 243


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 179 GTDEKAIIDVLCRRGIVQRLEIAETSRLTMART*LANSRVNSPATW 316
           G DE+A+ D++C+  ++ R      +   + +T         PATW
Sbjct: 210 GKDEEAL-DIMCKNNVLPREHEIIQTEYHVIKTDCEAEMAGGPATW 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,758
Number of Sequences: 5004
Number of extensions: 26432
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)