Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0518
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    40   0.001
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    36   0.018
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    36   0.018
Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical pr...    35   0.024
Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    30   0.92 
U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 101 TPTVYXXXXXXXXXXXXTLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETSRL 262
           TP+V+             LRKAMKG G +   +I +LC+R   QR EI++  ++
Sbjct: 140 TPSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKV 193



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +1

Query: 256 KTNYGKDLISELKSELTGNLENVIVALM 339
           K  YGKDLI ELK EL G+ E++I+ALM
Sbjct: 192 KVMYGKDLIKELKGELHGDFEDLILALM 219


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 101 TPTVYXXXXXXXXXXXXTLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETSRL 262
           TP+V+             LRKAMKG G +   +I +LC+R   QR EI++  ++
Sbjct: 182 TPSVFPVQGFNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKV 235



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +1

Query: 256 KTNYGKDLISELKSELTGNLENVIVALM 339
           K  YGKDLI ELK EL G+ E++I+ALM
Sbjct: 234 KVMYGKDLIKELKGELHGDFEDLILALM 261


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 155 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAET 253
           L+ AMKG GTDE  +I++LC R + Q   I  T
Sbjct: 93  LKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVT 125



 Score = 35.1 bits (77), Expect = 0.024
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 RGDLKTNYGKDLISELKSELTGNLENVIVALM-TPLPH 354
           R   K  YGKD+I  L  + +G+LE  I ALM TPL +
Sbjct: 51  REPYKLKYGKDIIQALDKKFSGDLEKAIFALMETPLDY 88



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 381 AVSGIGTDEEAIIEILCT 434
           A+ G+GTDE  +IEILC+
Sbjct: 96  AMKGLGTDEAVLIEILCS 113


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 155 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAET 253
           L+ AMKG GTDE  +I++LC R + Q   I  T
Sbjct: 93  LKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVT 125



 Score = 35.1 bits (77), Expect = 0.024
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 RGDLKTNYGKDLISELKSELTGNLENVIVALM-TPLPH 354
           R   K  YGKD+I  L  + +G+LE  I ALM TPL +
Sbjct: 51  REPYKLKYGKDIIQALDKKFSGDLEKAIFALMETPLDY 88



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 381 AVSGIGTDEEAIIEILCT 434
           A+ G+GTDE  +IEILC+
Sbjct: 96  AMKGLGTDEAVLIEILCS 113


>Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical
           protein C28A5.3 protein.
          Length = 317

 Score = 35.1 bits (77), Expect = 0.024
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 244 RGDLKTNYGKDLISELKSELTGNLENVIVALM-TP 345
           R   KT YGKDL  E+K   +G+ E+ +VAL+ TP
Sbjct: 49  RTPYKTRYGKDLEDEIKKAFSGDFEDFLVALLQTP 83



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 155 LRKAMKGFGTDEKAIIDVLCRR 220
           L +++KG GT+EK +I++L  R
Sbjct: 91  LNRSVKGLGTNEKNLIEILTTR 112



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 381 AVSGIGTDEEAIIEILCTLSN 443
           +V G+GT+E+ +IEIL T +N
Sbjct: 94  SVKGLGTNEKNLIEILTTRTN 114


>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query: 218 RGIVQRLEIAETSRLTMART*LANSRVNSPATWKMSSSH**LPCP---TFTLKELHRCCL 388
           R  V++  I E    TM  T L+  R+     +K + ++  + C    T ++++LH+ C 
Sbjct: 153 RVCVRKDTIQEFQLCTMDSTLLSCPRLRKKYMFKGAGNNMDMACLCIITLSVEKLHQLCN 212

Query: 389 RNWNRRRSHHRDPVH 433
            N N + SH +D  H
Sbjct: 213 LNINHQESHLQDVTH 227


>U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical
           protein ZC8.6 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 265 YGKDLISELKSELTGNLENVIVALMTPLPHFYAKGAPPMLSQELEPTKKPSSRS 426
           + K +  +  S + G + N+  ALM     +     PP L  E++  KK S RS
Sbjct: 461 FDKKIFEKQMSVMRGQIFNLREALMKKKSPYQLIQMPPQLMVEVKQKKKKSRRS 514


>U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical
           protein ZK177.4 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 256 KTNYGKDLISELKSELTGNLENVIVAL 336
           KT++G+D +S+   + TG+LE  + AL
Sbjct: 437 KTSFGRDSVSQPPMKSTGSLEQQLAAL 463


>Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical
           protein F33H2.1 protein.
          Length = 983

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 349 PHFYAKGAPPMLSQELEPTKKP 414
           PH   +  P  L +ELEP KKP
Sbjct: 204 PHTPGETPPVTLKEELEPVKKP 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,553
Number of Sequences: 27780
Number of extensions: 155233
Number of successful extensions: 456
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)