Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RJE3 Cluster: Mus musculus GCN2alpha; n=9; Plasmodium...    33   2.4  
UniRef50_Q2FPP5 Cluster: Putative uncharacterized protein precur...    33   4.3  
UniRef50_UPI0000E480D1 Cluster: PREDICTED: hypothetical protein,...    32   5.6  
UniRef50_A5E4U2 Cluster: Putative uncharacterized protein; n=1; ...    32   5.6  
UniRef50_A0DMX7 Cluster: Chromosome undetermined scaffold_57, wh...    31   9.8  

>UniRef50_Q7RJE3 Cluster: Mus musculus GCN2alpha; n=9; Plasmodium
            (Vinckeia)|Rep: Mus musculus GCN2alpha - Plasmodium
            yoelii yoelii
          Length = 1496

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 88   QFTYTIEKIHTDQDEINNIMSYFRYDVM*SI*TNHKYNYDFGADVETGIFKKAYIYSPTR 267
            QF Y+  KI     EI N++    YD+   +   + Y+Y F +   T I KK  I+ P +
Sbjct: 1384 QFNYSCPKIIIQVYEIENLL--VAYDLSKKLLNKNIYSYIFFSINNTNIKKKVKIFKPHK 1441

Query: 268  -RHIRSLRVTSNRI 306
             + I S++  SN I
Sbjct: 1442 IKFIISIKSNSNDI 1455


>UniRef50_Q2FPP5 Cluster: Putative uncharacterized protein
           precursor; n=1; Methanospirillum hungatei JF-1|Rep:
           Putative uncharacterized protein precursor -
           Methanospirillum hungatei (strain JF-1 / DSM 864)
          Length = 337

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 213 SEVIIIFVISSDRLHDVIAKITHNIIYFILICMNLFYRVSELWTYEI 73
           S  I++F+++S    D +  +TH  I+F+LI + L +    LW   I
Sbjct: 16  SMAILVFILASTFNEDTLQYLTHINIWFLLIAIGLRFVSFSLWAARI 62


>UniRef50_UPI0000E480D1 Cluster: PREDICTED: hypothetical protein,
            partial; n=1; Strongylocentrotus purpuratus|Rep:
            PREDICTED: hypothetical protein, partial -
            Strongylocentrotus purpuratus
          Length = 1405

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 245  LTSIHLRGDISARCGLRQIEYSCLNYGVYDLFELEDDVGCPGTEYC 382
            L   HL G+   +  L+ I+   +N+GVYDL  LE ++G  G  +C
Sbjct: 961  LAGKHLAGETMPK-SLKVIDLRLVNHGVYDLTSLEQELGL-GCTHC 1004


>UniRef50_A5E4U2 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 650

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 174 LHDVIA-KITHNIIYFILICMNLFYRVSELWTYEIFIFNLP 55
           LH  +A ++ H++     I + LF+ VS +  Y +FIFNLP
Sbjct: 90  LHKTLATQVYHSLFSKTFIHITLFHVVSAILFYGVFIFNLP 130


>UniRef50_A0DMX7 Cluster: Chromosome undetermined scaffold_57, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_57,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 105

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 204 IIIFVISSDRLHDVIAKITHNIIYFILICMNLFYRVSELWTYEIFIFN 61
           II F  SS   H +I    H      L C  L +++   WT ++FIF+
Sbjct: 20  IINFTFSSYLQHSIIFVQRHIKKEIYLNCFTLIFKLQHPWTLQLFIFH 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,418,763
Number of Sequences: 1657284
Number of extensions: 6863115
Number of successful extensions: 21968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21956
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)