Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    31   0.12 
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    28   0.83 
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   2.5  

>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 222 GNRNLQKSLHLFTYAATYPLAAGYVKSNIVV*ITEFMIYS 341
           G RN++  +HLFT++ TYP  AG + S +   + E M YS
Sbjct: 28  GIRNVKGGIHLFTWSPTYP--AGLI-SGVFAMVHEDMKYS 64


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 132 FILICMNLFYRVSELWTYEIFIFNL-PKIEN*IKLTV 25
           FI I  + FY + ++W   + +F+L P+I   I LTV
Sbjct: 392 FITIFSHFFYHIDDMWRSTLGLFSLIPQIIGIIYLTV 428


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -1

Query: 243 FFEDSCFHIGSEVIIIFVISSDRLHDVIAKITH----NIIYFILICMNLFYRVSELWTYE 76
           F+    + +  +++I FV+   +L   +A + +     II    IC +   R+   WTY 
Sbjct: 107 FWRYFAYLLSLQIVIDFVLY--KLSSAMASLHYLKFVKIIALSYICFSSLIRICHCWTYF 164

Query: 75  IFIFNLPKIEN*IKL 31
           I I  L  +   + L
Sbjct: 165 IRIMGLSSLNKFVNL 179


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 276 DMSPRR*IDVSFFEDSCFHIGSEVIIIFVISS------DRLHDVIAKITHNII 136
           ++ P+  I V FF+ S F+I S V ++ +  +      D   D I+K TH+ +
Sbjct: 489 NIPPKELIYVLFFQPSAFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYL 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,396
Number of Sequences: 5004
Number of extensions: 29020
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)