Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534...    29   1.4  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    29   2.5  
07_03_1184 - 24628848-24629294                                         27   7.7  

>01_06_0891 -
           32752825-32752932,32753085-32753176,32753293-32753408,
           32754055-32755969,32756037-32756171,32756549-32756870
          Length = 895

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 179 SELITNIIMTSEPMWKQESSKKLTSIHLRGDISARCG----LRQIEYSCLNYGVYDLFEL 346
           S+    + M+S    +   +++ TSI   G  S  CG    + + + +  N+ V D  E 
Sbjct: 75  SDSSARVFMSSPSRIRNTDAQQSTSIRSHGQDSKYCGGMDVMNEGKETSDNFCV-DKLEK 133

Query: 347 EDDVGCPGTEYC 382
           ED+VG   T YC
Sbjct: 134 EDEVGSCPTRYC 145


>04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,
            7469505-7469622,7470035-7470067,7470400-7470474,
            7470887-7471043,7471142-7471230,7472041-7472294,
            7472977-7473148,7473250-7473333,7473626-7473730,
            7474055-7474363,7474622-7474756,7476236-7476317,
            7476423-7476502,7476622-7476783,7477071-7477138,
            7478422-7478502,7478634-7478760,7478816-7478879,
            7480808-7480854,7481042-7481335
          Length = 1149

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +1

Query: 64   KNKDFISPQFTYTIEKIHTDQDEINN 141
            + K+ +S ++ +TI+KIH DQ+ +++
Sbjct: 1109 ETKELLSGRWNFTIQKIHRDQNRVSH 1134


>07_03_1184 - 24628848-24629294
          Length = 148

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 366 RARSTAVGSWRN*PPSQPTPVEPGERAAGLEAG 464
           + R T  G     PPS+P PV     AA L +G
Sbjct: 35  KKRGTTAGGGTEHPPSRPAPVRAKSIAAELASG 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,089
Number of Sequences: 37544
Number of extensions: 182263
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)