Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)              30   0.85 
SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.6  
SB_7788| Best HMM Match : PAN (HMM E-Value=0.0013)                     28   3.4  
SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)               27   6.0  
SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
          Length = 468

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 389 SDRSTPCPDSLHHPLTRINHKLRNLNNYIRFDVTRSERICRR 264
           SD +T   +S+++   R   K +N  NY  FD+ RS ++ +R
Sbjct: 281 SDNATAMIESIYNEEMREQEKRKNNKNYTAFDLFRSPKLRKR 322


>SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1136

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 296 QIEYSCLNYGVYDLFELEDDVG 361
           QIEY  +N GV DLF++E   G
Sbjct: 593 QIEYRLVNVGVNDLFQVERSTG 614


>SB_7788| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 294

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 334 FIRVRG*CRLSGHGVLRSEVGEISRRRSR 420
           F RV G C L+ HG+ R+  GE   R S+
Sbjct: 65  FDRVSGVCELNDHGLRRNTDGEFMLRHSK 93


>SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)
          Length = 801

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -1

Query: 204 IIIFVISSDRLHDVIAKITHNIIYFILICMNLFYRVSELWTYEIFIFNL 58
           + +F +  D L     + ++ +  F LI M+ F++ +   +Y++F+F+L
Sbjct: 318 VFVFSLIMDNLLQAAYQSSYQVFVFSLI-MDNFFQAAYQSSYQVFVFSL 365


>SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 372 RSTAVGSWRN*PPSQPTPVEPGERAAGLEAGP 467
           ++T + +W+  PPS+P+ +  G R  G++A P
Sbjct: 254 KNTNISTWKRDPPSRPSQLRQGVR--GVQAVP 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,766,183
Number of Sequences: 59808
Number of extensions: 207195
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)