Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    25   1.8  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   9.5  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    22   9.5  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 394 GEISRRR--SRRLWNPGSVPPGWKPVR 468
           G I R R  S+R+  PG VPP  + VR
Sbjct: 877 GSIERLRNPSQRVKTPGDVPPSVRKVR 903


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 359 LHHPLTRINHKLRNLNNYIRFDVTRSE 279
           LHHP  ++N KL + +  I  D  R E
Sbjct: 404 LHHPNCKMNRKLNSGDLGIGADSCRRE 430


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1049

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 361  LSGHGVLRSEVGEISRRRSRR 423
            LSGHG  RS +   +R  S R
Sbjct: 950  LSGHGCFRSYLHRFNRASSSR 970


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,829
Number of Sequences: 2352
Number of extensions: 6623
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)