Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41018-4|AAA82327.2|  321|Caenorhabditis elegans Dehydrogenases,...    26   3.7  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
           protein F21H7.3 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 153 ITHNIIYFILICMNLFYRVSELWTYEIFIFNLPKIEN 43
           +TH+I Y  L+ +NLF+ +  +W   I   N  K EN
Sbjct: 1   MTHHICY--LVILNLFFLIIPIWFLSIGFKNQGKCEN 35


>U41018-4|AAA82327.2|  321|Caenorhabditis elegans Dehydrogenases,
           short chain protein26 protein.
          Length = 321

 Score = 25.8 bits (54), Expect(2) = 3.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 149 VIFAMTSCNLSELITNIIMTSEPMWKQESSKKLTSIHLRGDISARCG 289
           VI    S   +ELITN+I TS   W    +K    + L G+ +  CG
Sbjct: 198 VISLWPSAVKTELITNMIETSAGSWGATENK----MFLNGESTEYCG 240



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 371 TEYCGRKLEKLAA 409
           TEYCG+ +  +AA
Sbjct: 236 TEYCGKAVVAIAA 248


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 N*PPSQPTPVEPGERAAGL 455
           N PPSQPTP+  G   AG+
Sbjct: 347 NLPPSQPTPIGGGVAPAGV 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,297
Number of Sequences: 27780
Number of extensions: 164015
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)