Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0515
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   5.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   5.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 168 DVIAKITHNIIYFILI 121
           DVIA+IT  + YF+ +
Sbjct: 463 DVIARITFPVAYFMFL 478


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 168 DVIAKITHNIIYFILI 121
           DVIA+IT  + YF+ +
Sbjct: 449 DVIARITFPVAYFMFL 464


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 168 DVIAKITHNIIYFILI 121
           DVIA+IT  + YF+ +
Sbjct: 483 DVIARITFPVAYFMFL 498


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 168 DVIAKITHNIIYFILI 121
           DVIA+IT  + YF+ +
Sbjct: 432 DVIARITFPVAYFMFL 447


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 341 ELEDDVGCPGTEYCG 385
           ELE+ +  PGT +CG
Sbjct: 24  ELEERIIYPGTLWCG 38


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 341 ELEDDVGCPGTEYCG 385
           ELE+ +  PGT +CG
Sbjct: 29  ELEERIIYPGTLWCG 43


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 341 ELEDDVGCPGTEYCG 385
           ELE+ +  PGT +CG
Sbjct: 29  ELEERIIYPGTLWCG 43


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 359 LHHPLTRINHKLRN 318
           LHHP  +IN K+ +
Sbjct: 400 LHHPNCKINRKVHH 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,081
Number of Sequences: 438
Number of extensions: 2096
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)