Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0514
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 51 1e-07
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 28 0.80
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 1.4
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 27 1.4
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 26 3.2
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 26 3.2
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 26 3.2
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 25 7.5
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.5
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 9.9
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = -1
Query: 507 AICALGEGWHNYHHVFPWDYKAAELGDYSTNLSTALIDIAAKYGLAYDLKTVSEKMIRNR 328
A+ LGEG HNYHH FP DY+ L Y + + I IA+ +GLAY+L T + I+
Sbjct: 275 ALVTLGEGNHNYHHAFPNDYRNG-LRWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKG 333
Query: 327 I 325
I
Sbjct: 334 I 334
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 490 RGLAQLSSRISLGLQSGRARRLQHQFINRLN 398
R + L S+I+L +Q+ A+ QH+F RLN
Sbjct: 73 RDVRYLDSKIALLIQNRMAQEEQHEFAKRLN 103
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 417 NLSTALIDIAAKYGLAYDLKTVSEKMIRNRINRTGDGTHPWA-KQKAELE 271
N + ALI I A+ ++K++SE + IN ++ +A K+K ELE
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 417 NLSTALIDIAAKYGLAYDLKTVSEKMIRNRINRTGDGTHPWA-KQKAELE 271
N + ALI I A+ ++K++SE + IN ++ +A K+K ELE
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 154 ELLISSHSFCEQFPPISYHRLTCLYRPS 237
EL IS H F + ++Y R C Y PS
Sbjct: 41 ELNISGHFFRNKLKYLAYLRKACRYNPS 68
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 154 ELLISSHSFCEQFPPISYHRLTCLYRPS 237
EL IS H F + ++Y R C Y PS
Sbjct: 41 ELNISGHFFRNKLKYLAYLRKACRYNPS 68
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 154 ELLISSHSFCEQFPPISYHRLTCLYRPS 237
EL IS H F + ++Y R C Y PS
Sbjct: 41 ELNISGHFFRNKLKYLAYLRKACRYNPS 68
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 127 HKMCTSET--LELLISSHSFCEQFPPISYHRLTCLYRP 234
H + ET LEL +S ++ +Q+ I + RLT L RP
Sbjct: 6 HSIPCEETKRLELSLSQQTYSQQYASIYFARLTAL-RP 42
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 507 AICALGEGWHNYHHVFPWDYKAAELGDYS 421
++ GE W HH+ DY E G +S
Sbjct: 525 SLLGTGEKWTMLHHINTTDYLNYETGKFS 553
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 387 AKYGLAYDLKTVSEKMIRNRINRTGDGTHPWAKQKAELEEDHH 259
A G YD T+ IRN ++ + D W Q L H
Sbjct: 350 ANSGTLYDYPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFH 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,588
Number of Sequences: 5004
Number of extensions: 41877
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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