Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0514
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.90 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   8.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = -1

Query: 477 NYHHVFPWDYKAAELGDYSTNL----STALIDIAAKYGLAYDLKTVSEKMIRNRINRTGD 310
           ++HH       AA  G  S+ +    STA    A     A D  T  +K  R   +  G+
Sbjct: 98  HHHHQQQQAVAAAAFGATSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGN 157

Query: 309 GTHPWAKQKAELEEDHHHQ 253
                A         HHHQ
Sbjct: 158 VAPASADPMVNYTLGHHHQ 176


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 NSFNINLHKMCTSETLELLISSHSFCEQFP 195
           ++   +L +  +SE  +L +   SFC+ FP
Sbjct: 267 DNLETSLFRPLSSEATDLRMGVASFCKAFP 296


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 437 SSETTAPIYQPP*LTSLQNTA 375
           S E  A   QPP +TS+ NT+
Sbjct: 81  SDEEYAANSQPPRITSVPNTS 101


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 303 HPWAKQKAELEEDHHHQKTL 244
           HPW  Q+  +    H Q+T+
Sbjct: 167 HPWICQRERVASVVHRQETV 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,185
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)