Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0512
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 297 PYLKLATSNNSR 262
           PY KL T+NN R
Sbjct: 445 PYYKLKTANNKR 456


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 466 FGYNNKPYLTCTHGTCEFI---KLSCFVVFVMLSVLFATP 356
           FG   +  +  T+  C FI    LS FV+ V  + L  TP
Sbjct: 307 FGKTGRKTVLKTNKYCNFIILFYLSVFVILVYYASLDETP 346


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 282 ATSNNSRISYTYKQFCHYAFNT*VIHAIIM 193
           + +NN++      Q+C+ AF   V++ I M
Sbjct: 461 SNNNNNKEEGNSCQYCNIAFGDAVLYTIHM 490


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,824
Number of Sequences: 336
Number of extensions: 2104
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)