Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0512
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0457 - 3506709-3506717,3507386-3507484,3507701-3508034,350...    28   5.3  

>03_01_0457 -
           3506709-3506717,3507386-3507484,3507701-3508034,
           3508241-3508443,3508519-3508632,3508707-3508817,
           3508907-3509016,3509132-3509241,3509450-3509628,
           3509746-3509907,3509996-3510114,3510336-3510423,
           3510520-3510625,3510769-3510857,3511211-3511354,
           3511459-3511518,3511534-3511656,3511745-3511811,
           3511941-3512053,3512140-3512235,3512651-3512818
          Length = 867

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 628 FICEVFKIHGPLRNALWTRPFSEWHNHF 545
           F C+ F  + P +  +WT  +S W   F
Sbjct: 264 FYCDTFSPNKPYKPTMWTEAWSGWFTEF 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,601
Number of Sequences: 37544
Number of extensions: 178822
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)