Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0512
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical pr...    32   0.29 
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical
           protein K04C1.3 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +1

Query: 460 NQTQIKAHFMMIFVKFKSQFYLQRLV*HKNDCAILKKDVSIR 585
           N T++  H++  F+K +   Y+Q  V HK++ A LK+ ++++
Sbjct: 79  NNTELLRHYLQHFIKIEEARYMQLGVIHKDNYASLKEAMNVQ 120


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -3

Query: 115 NLNLNSS-NYTRNNLFHDFNLE*IHSR--FSTYTCA 17
           NLNLN++ N+   N+FH F+ E  +++  F+ + CA
Sbjct: 81  NLNLNNTENWFPLNIFHTFHFEFAYTQYIFNCFVCA 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,609
Number of Sequences: 27780
Number of extensions: 191446
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)