Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0512
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18400.1 68416.m02340 no apical meristem (NAM) family protein...    29   3.4  
At3g29638.1 68416.m03731 expressed protein ; expression supporte...    27   7.8  
At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,...    27   7.8  

>At3g18400.1 68416.m02340 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GP:1279640  NAM {Petunia x hybrida}
          Length = 314

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 118 PNLNLNSSNYTRNNLFHDFNLE*IHSRFSTYTCARNN 8
           PNLN NSS    NN  H ++   ++S  +T + A  N
Sbjct: 192 PNLNSNSSTIDYNNHIHQYSQRNVYSEDNTTSTAGLN 228


>At3g29638.1 68416.m03731 expressed protein ; expression supported
           by MPSS
          Length = 412

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 YLMLPILGTASNGFIVRNVSLNTAH*QLRGVAKRTDNITNTTKH 401
           Y +L I+ T S    + N++++TA  QL+G+     N     KH
Sbjct: 291 YDLLFIVNTVSKVMQIENIAIDTALVQLKGLLSYFRNYREVEKH 334


>At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase [Lycopersicon
           esculentum] GI:7939619, beta-galactosidase BG1
           GI:15081596 from [Vitis vinifera]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 732

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 628 FICEVFKIHGPLRNALWTRPFSEWHNHF 545
           F C+ F  + P +  +WT  +S W   F
Sbjct: 238 FYCDYFTPNKPYKPTMWTEAWSGWFTEF 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,279
Number of Sequences: 28952
Number of extensions: 165518
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)