Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0511
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   2.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   3.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   4.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   5.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   5.5  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    25   5.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   9.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   9.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    24   9.6  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 263 SISARAYKQLLQQKNDIGVIKTKVMNIDKFRAYC 364
           S+ +R Y   LQ+   + VI   V++  +FR +C
Sbjct: 479 SLRSRQYLSSLQRTRKLSVIIENVISGSRFRCFC 512


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 69  SVPPPPRTPLVFYGS*SSGHPCRRSRASND 158
           S P PP+T +  +GS  S  P R    SN+
Sbjct: 230 SAPDPPKTSMPPFGSAGSPSPNRSLNVSNN 259


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 257 IKSISARAYKQLLQQKNDIGVI 322
           IKS+S + Y++LL +  D+G++
Sbjct: 177 IKSLSNQKYRELLSEFGDVGLM 198


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 45  LPCELESVSVPPPPRTPLVFYGS*SSGHPCRRSRAS--NDVAGL 170
           LP E E VS+ PP +  L  +   SS      S  S  +D+ GL
Sbjct: 193 LPAEFEEVSISPPVKLELPTHSHNSSDTSFTNSIVSSVSDMVGL 236


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 135 GRDGPKTKSRRRPGESAA 82
           GRDG  +KS RRP  SA+
Sbjct: 86  GRDGLPSKSPRRPSVSAS 103


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 144 ESVGRDGP--KTKSRRRPGESAAEGGRKHSLTRKARQD 37
           ES+ +  P  KTK +R       EG +    TRK ++D
Sbjct: 62  ESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKED 99


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 236 CGPVE*QIERKKKHVRINSLQLQ 168
           C P E Q+++KK+    N +QLQ
Sbjct: 8   CCPFEGQMQQKKRRFDANLVQLQ 30


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  ALPCELESVSVPPPPRTPLV 101
           A+P   E+ SVP PP  P+V
Sbjct: 624 AVPVVPEAPSVPQPPAAPVV 643



 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  ALPCELESVSVPPPPRTPLV 101
           A+P   E+ SVP PP  P+V
Sbjct: 654 AVPVVPEAPSVPQPPAAPVV 673


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  PCELESVSVPPPPRTPLV 101
           P  + + S+PP P  PLV
Sbjct: 228 PATIAATSIPPVPNVPLV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,557
Number of Sequences: 5004
Number of extensions: 25043
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)