Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0511
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1008 - 10206743-10206778,10207006-10207506 31 0.42
04_04_1300 - 32457901-32457985,32458375-32459468 31 0.42
11_01_0621 - 4981070-4981136,4982906-4983825 29 1.7
03_05_0796 + 27787401-27788831 28 2.2
02_05_1277 - 35408097-35409080 28 2.2
09_06_0149 - 21222976-21223065,21223460-21224173 28 3.0
06_01_0561 - 3983308-3983564,3983652-3983775 28 3.0
05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561 28 3.0
07_03_1286 + 25482632-25482685,25483948-25484145,25484242-254844... 27 3.9
08_02_1104 + 24339463-24340314,24340472-24340786 27 5.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 27 5.2
04_04_1511 + 34093914-34094084,34095315-34095406,34095660-34096230 27 5.2
02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221 27 5.2
10_01_0334 - 3680612-3681266,3682253-3682374 27 6.9
07_03_1255 + 25234072-25234220,25235052-25235288,25235713-252358... 27 6.9
07_03_0303 + 16465918-16465991,16466376-16466436 27 6.9
12_02_0407 - 18654134-18654172,18654913-18655803 26 9.1
08_02_0230 - 14572854-14574632 26 9.1
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 26 9.1
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 26 9.1
06_03_1016 - 26916978-26917244,26917499-26917642,26917708-269177... 26 9.1
06_03_0595 - 22605177-22605536 26 9.1
05_03_0480 - 14534133-14534759,14535184-14535405 26 9.1
>08_01_1008 - 10206743-10206778,10207006-10207506
Length = 178
Score = 30.7 bits (66), Expect = 0.42
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 29 NCKSCLALRVRECFRPPSAADSPGLLRLLVFGPSLP 136
+C ++LR+ +C PP P L RL + G +LP
Sbjct: 28 SCAELVSLRLEKCDMPPGFPGFPNLERLYLVGVTLP 63
>04_04_1300 - 32457901-32457985,32458375-32459468
Length = 392
Score = 30.7 bits (66), Expect = 0.42
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +3
Query: 57 LESVSVPPPPRTPLVFYGS*SSGHPCRR 140
L V PPPR PL F S S GH RR
Sbjct: 14 LHRVESLPPPRPPLAFLSSESRGHLVRR 41
>11_01_0621 - 4981070-4981136,4982906-4983825
Length = 328
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 141 SVGRDGPKTKSRRRPGESAAEGGRKHSL--TRKARQDLQL 28
SVG G K K +P +AA GG+K+ +K +Q+ QL
Sbjct: 209 SVGGGGGKKKVSPKPPAAAAAGGKKNKTKGKKKKKQEAQL 248
>03_05_0796 + 27787401-27788831
Length = 476
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 6 KCAKIVSLIVSLALPCELE--SVSVPPPPR 89
K A++V LI S LP EL+ + PPPPR
Sbjct: 144 KKARLVDLIRSPLLPAELDGSDKAAPPPPR 173
>02_05_1277 - 35408097-35409080
Length = 327
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 21 VSLIVSLALPCELESVSVPPPPRTPLV 101
+ L ++L P + ESVS PPPP P++
Sbjct: 273 LELDLNLPAPSDEESVSPPPPPPPPVL 299
>09_06_0149 - 21222976-21223065,21223460-21224173
Length = 267
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 24 SLIVSLALPCELESVSVPPPPRTPLVFYGS*SSGHPCRRSRAS-NDVAGL 170
+++ S ALP L PPPP P +Y + PCR + + D AGL
Sbjct: 104 AVLPSAALPL-LGERPPPPPPPPPKRYYRCNAYAMPCRSNPLNVTDTAGL 152
>06_01_0561 - 3983308-3983564,3983652-3983775
Length = 126
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 57 LESVSVPPPPRTPLVFYGS*SSGHPCRRSRAS 152
+ES+S PPPP F+ S+G+P R AS
Sbjct: 97 IESISPPPPPEQDGQFFS--STGYPTRPPPAS 126
>05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561
Length = 512
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 150 RHESVG-RDGPKTKSRRRPGESAAEGGRK 67
+H SV R PK ++RRP + AA+ RK
Sbjct: 95 KHHSVTERHRPKVSAKRRPNKKAAKAARK 123
>07_03_1286 +
25482632-25482685,25483948-25484145,25484242-25484464,
25484762-25484958,25485150-25485237,25487103-25487197,
25487585-25487705,25487795-25487831,25487924-25487951,
25488175-25488327,25488666-25488768,25488868-25488932
Length = 453
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 153 LRHESVGRDGPKTKSRR-RPGESAAEGGRKHSLTRKARQDLQ 31
LR SVG K ++RR RP G R H LT++ RQ+++
Sbjct: 278 LRFRSVGASTVKGQTRRERP-----RGARPHGLTKQKRQEIK 314
>08_02_1104 + 24339463-24340314,24340472-24340786
Length = 388
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 33 VSLALPCELESVSVPPPP 86
V++A P ES+SVPPPP
Sbjct: 114 VTVANPATRESLSVPPPP 131
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 53 RVRECFRPPSAADSPGLLRLLVFGPSL 133
R+R+ P SAA SP L R L+ P+L
Sbjct: 105 RLRQLLLPTSAAHSPSLARALLSVPAL 131
>04_04_1511 + 34093914-34094084,34095315-34095406,34095660-34096230
Length = 277
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 54 ELESVSVPPPPRTPLVFYGS*SSGHPCRRSRASNDVA 164
+L S + PPP P++ G S P RSR ND+A
Sbjct: 12 QLPSQELHPPPM-PVINLGHLSLDDPTVRSRVVNDIA 47
>02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221
Length = 114
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 12 AKIVSLIVSLALPCELESVSVPPPPRTPLV 101
A + L + + C+L++V PPPP T LV
Sbjct: 16 AVAIWLAATSSYQCKLDAVPPPPPPPTVLV 45
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 126 GPKTKSRRRPGESA-AEGGRKHSLTRKA 46
G +SRRR G+S A GGRK S +R++
Sbjct: 183 GGHGRSRRRRGQSRRARGGRKSSSSRRS 210
>07_03_1255 +
25234072-25234220,25235052-25235288,25235713-25235845,
25235935-25236237
Length = 273
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 12 AKIVSLIVSLALPCELESVSVPPPPRTP 95
A VSL V +AL C ++ ++ PPP R P
Sbjct: 10 AVFVSLAVHVALHCPIQPLA-PPPARPP 36
>07_03_0303 + 16465918-16465991,16466376-16466436
Length = 44
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 46 CLAS*RVFPSPLRRGLP 96
C+AS FPSP RRG P
Sbjct: 12 CVASIAAFPSPPRRGYP 28
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 33 VSLALPCELESVSVPPPPRTP 95
++L P E+++VPPPPR P
Sbjct: 121 LTLVNPSTGETLAVPPPPRLP 141
>08_02_0230 - 14572854-14574632
Length = 592
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 9 CAKIVSLIVSLALPCELESVSVPPPPR 89
C ++ + L L C++ S S+P PPR
Sbjct: 135 CVGLLRHVEELRLECQVASGSLPSPPR 161
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 LESVSVP--PPPRTPLVFYGS*SSGHPCRRSRASNDVAGLKL*TINSDMFFFSF 212
LE++++P PRT GS P R + N A LK TINSD+ +
Sbjct: 260 LEALNIPLLSNPRTMEAKDGSQFEEDPMRDTLVENKDARLKERTINSDLMAIKY 313
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 26 SNCKSCLALRVRECFRPPSAADSPG 100
+ C++CLA + E R AA SPG
Sbjct: 207 AQCRACLASAMEEMTRQVFAASSPG 231
>06_03_1016 -
26916978-26917244,26917499-26917642,26917708-26917783,
26917875-26918010,26918332-26918473,26920020-26920035,
26920222-26920574
Length = 377
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 141 SVGRDGPKTKSRRRPGESAAEGGRKHSLTRKARQDLQLD 25
SV + G + K+ + A GGR+ ++ +K +LQL+
Sbjct: 109 SVYKSGIQLKTYGKKPRRALHGGRRKAMMKKCPSELQLE 147
>06_03_0595 - 22605177-22605536
Length = 119
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +3
Query: 33 VSLALPCELESVSVPPPPRTPLVFYGS*SSGHPCRRSRASN 155
VSL LP L S PPPP P GS ++G P R N
Sbjct: 5 VSLLLPLILSPCS-PPPPLPPTADAGS-AAGTPPMPDRRGN 43
>05_03_0480 - 14534133-14534759,14535184-14535405
Length = 282
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 135 GRDGPKTKSRRRPGESAAEGGRKHSLTRKARQD 37
GR+G ++ RRR E GR+ + K R D
Sbjct: 193 GREGARSSWRRRGSSIVTEAGRELVVLNKQRPD 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,832,147
Number of Sequences: 37544
Number of extensions: 179583
Number of successful extensions: 762
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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