Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0511
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 29   1.3  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        28   3.1  
SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)                 27   5.3  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     27   7.1  

>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 254 QIKSISARAYKQLLQQKNDIGVI 322
           Q K +S R Y Q+LQ+  DIG++
Sbjct: 551 QYKKVSGRCYPQILQEDIDIGIL 573


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 212 ERKKKHVRINSLQLQTCYII*GTRASAGMARRLRAVEDQ 96
           E K K   IN+L+  T  +   T+    + RRLRAVEDQ
Sbjct: 109 ELKAKEDEINTLKQDTVRL---TKMREAIQRRLRAVEDQ 144


>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
          Length = 881

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 88  GLPWSSTALSLRAIPADALVPQMM 159
           G  WSS A+ L+ IPAD +  +++
Sbjct: 276 GSVWSSLAVKLKGIPADVVAKRLL 299


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 75   PPPPRTPLVFYGS*SSGHPCRRSR 146
            PPPP++P++F GS  S     RS+
Sbjct: 1176 PPPPKSPVMFSGSVKSPPVLERSQ 1199


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 150 RHESVGRD--GPKTKSRRRPGESAAEGGRKHSLTRK 49
           + E++G++  G  T  R  P E   E GRKHS   K
Sbjct: 379 QQETIGQENEGQITNPRDPPSEPVRETGRKHSKEEK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,748
Number of Sequences: 59808
Number of extensions: 200998
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)