Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0511
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.7  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   6.5  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    20   8.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 21  VSLIVSLALPCELESVSVPPPPRTPLV--FYG 110
           +S ++S+ +       S+PP  +TPL+  +YG
Sbjct: 249 ISALLSMTVFLMTIRESLPPTEKTPLISLYYG 280


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 63  SVSVPPPP 86
           SVS+PPPP
Sbjct: 761 SVSIPPPP 768


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 385 GCSHSGLTIRPELINIHHFGF 323
           G ++ GL IRP   +  H GF
Sbjct: 72  GDAYGGLNIRPGQPSRQHAGF 92


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 198 FFFSFYLLFNWPAISSIYFKLNL*VHVLTNSYCNK 302
           FF S  L+ ++    ++  K N   HV+    C K
Sbjct: 10  FFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRK 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,094
Number of Sequences: 438
Number of extensions: 1795
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)