Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0511
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr...    29   1.4  
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr...    29   1.4  
At5g26790.1 68418.m03196 expressed protein                             28   1.9  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            27   4.4  
At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /...    27   5.8  
At4g39130.1 68417.m05540 dehydrin family protein contains Pfam d...    26   7.6  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    26   7.6  

>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 340

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 48  PCELESVSVPPPPRTPLVFYGS*SSGHPCRRSRASN 155
           P  L S+  PPPPR   +      +GH     RA N
Sbjct: 115 PQSLASLEPPPPPRAQYILAADRPTGHILAERRAEN 150


>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 413

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 48  PCELESVSVPPPPRTPLVFYGS*SSGHPCRRSRASN 155
           P  L S+  PPPPR   +      +GH     RA N
Sbjct: 115 PQSLASLEPPPPPRAQYILAADRPTGHILAERRAEN 150


>At5g26790.1 68418.m03196 expressed protein
          Length = 68

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 85  RGLPWSSTALSLRAIPADALVPQMM*QV*SCKLLILTCFFFL 210
           R L W    LSL ++  D +V +++    S  L+ + CFFFL
Sbjct: 21  RWLSWRRPELSLLSVVVDDVVWKVVTAFESVALVSMLCFFFL 62


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -1

Query: 216 NRKKKKTCQN**FTTSNLLHHLRHESVGRDGPKTKSRRRPGESAAEGGRKH 64
           +R+K+ + ++   + S  +HH  H + GR G K +S+R+  +++A G   H
Sbjct: 627 HRRKRTSTKSVVGSASPSVHHRGHIAKGR-GSKNRSQRQLRKTSAAGTPSH 676


>At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 434

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 63  SVSVPPPPRTPLVFYGS*SSGHPCRRS 143
           SVS PPPPR   +  GS   G   +R+
Sbjct: 79  SVSPPPPPRLAYLISGSSGDGQMLKRT 105


>At4g39130.1 68417.m05540 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 151

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -1

Query: 177 TTSNLLHHLRHESVGRDGPKTKSRRRPGESAAEG-----GRKHSLTRKARQDLQLD*QSL 13
           TT+N  HH +  SV  D  +    R  G S+ E      GRK ++T + +  L +D  S 
Sbjct: 60  TTTNTPHHAQPISVSHDPLQDHDLRWFGTSSTEENGEGVGRKTNITDETKSKLGVDKPSA 119

Query: 12  RT 7
            T
Sbjct: 120 AT 121


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 20  C*SNCKSCLALRVRECFRPP--SAADSPGLLR 109
           C  NCK      V E F+PP  SA +SP + R
Sbjct: 170 CSDNCKCINCKNVSEAFQPPAFSAHNSPQVYR 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,769,872
Number of Sequences: 28952
Number of extensions: 136099
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)